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Overall, the samples that biomolecular archaeologists work with come from i) directly from Two major sources for samples are:i) ongoing archaeological excavations or ii) from collections. For each project a rigid sampling strategy must be put in place.  

  • Sampling Protocols and Workflow 
  • Step-by-step procedures for collecting different sample types (bone, ceramic, soil, etc.) 
  • Responsible personnel and their roles in the sampling process 
  • Sampling context: in-field vs. in-lab preparation 
  • Sterility and contamination prevention measures 
  • Handling of control samples and blanks (where applicable) 

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Bonesamples: Based on theresearchquestiondecidewhich site and pots tosample (responsibility: archaeologist) -> Collectthesamplesfromthecollections / archaeologicalexcavations (responsibility: archaeologist) -> In thelab,clean the worksurfacewithacetoneordichloromethane and place a cleansheet of tinfoil (labtechnician) -> Use a clean drill bit/saw to drill into the bone fragments/powder -> Collect the drilled bonepowder/pieces and place it in a clean container -> Label the container with relevant information (fordetails see ##ORA lipid residue extraction) -> fill in thesamplingreport/protocol (archaeologist/labtech and collectionholder). 

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Pottery samples: Based on the research question decide which site and pots to sample (responsibility: archaeologist) -> Collect the samples from the collections / archaeological excavations (responsibility: archaeologist) -> In the lab, clean the work surface with acetone or dichloromethane and place a clean sheet of tinfoil (lab technician) -> Use a clean drill bit to drill into the ceramic matrix -> Collect the drilled ceramic matrix and place it in a clean container -> Label the container with relevant information (for details see ## Archemy Protocol Sampling of Ceramic Foodcrust and Documentation_Sampling protocol for ceramic.doc) -> fill in the sampling report/protocol (archaeologist/lab tech and collection holder). 

  • Metadata Requirements 
    • Name of the site (in its original language)  
    • Sample ID and associated collection numbers 
    • Mass and physical dimensions of a sample 
    • Material description and classification 
    • Exact location (grid coordinates, layer, feature, context) 
    • Date of sampling  
    • Chronological period of the object/context 
    • Sampler name and institutional affiliation 
    • Method used for sampling (e.g., surface scraping, core drilling) 
    • Condition assessment (preservation state, visible damage, prior treatments) 
    Documentation Protocols
  • Documentation of samples  
    • Photographic documentation (before and after sampling)
  •  Written records or field/lab notes
    •  
    • Use of standardised forms or checklists – fill in the Sampling Protocol 
    • File naming conventions and linkage to metadata records 
    • Version control and backup strategies for documentation files 
  • Sampling Protocol Form and Submission 
    • Description of the standardised form for logging sample metadata 
    • Required and optional fields 
    • Submission pathways (digital upload, paper archive, SharePoint
  • entry
    • entry) 
    • Review and approval workflows for submitted forms 
    • The sampling Protocol will be signed by all parties involved and submitted to the collection holder 
  • Applied Analytical Method(s) 
    • Indication of which methods are planned (e.g., LC-MS, GC-MS, aDNA, FTIR) 
    • Linking method selection to research design and sample suitability 
    • Responsible lab, researcher (and project) 
    • Reference to associated lab protocols and instrument parameters 
    • Recording instrument settings and software versions used 
  • Sample Quality and Usability Assessment 
    • Criteria for evaluating sample integrity and suitability for analysis 
    • Visual and microscopic assessment protocols 
    • Pre-screening steps for destructive methods 
    • Documentation of rejected samples and reasons for exclusion 
    • Tracking remaining material post-analysis (residual storage, disposal) 
  • Chain of Custody and Sample Tracking 
    • Labelling and physical tagging of samples
  •  
    • , see 3.5
    • Logging sample movements across labs or institutions
  •  
    • Storage conditions and container specifications
  •  
    • Digital tracking tools and database entries (e.g., ARHUT sample
    • passport
    • protocol) 


References

Sampling protocol of the Archaeological Research Collections of the Tallinn University.




Sampling protocol for ceramic foodcrust